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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-DR1xCatongo
(Reference Set) 		Cocoa-consensus_disease_res
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Correspondences
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Maps LG8 LG8
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - DR1xCatongo [ View Map Set Info ]
Map Name: LG8
Map Start: 0 cM
Map Stop: 88.1 cM
Features by Type:
7 Marker
1 QTL
8 Total

Map Features

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Items 1 to 8 of 8.
Cocoa - DR1xCatongo - LG8
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AFLP_DxC52/5 Marker 88.1 No other positions
AFLP_DxC56/1 Marker 56.2 No other positions
gTcCIR111 Marker 51 Cocoa - test - LG8 gTcCIR111 Marker 26.2 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 gTcCIR111 Marker 26.2 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG8 gTcCIR111 Marker 6.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 gTcCIR111 Marker 26.2 (cM) Automated name-based View Maps
gTcCIR124 Marker 44.8 Cocoa - S52xCatongo - LG8 gTcCIR124 Marker 3 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 gTcCIR124 Marker 26.8 (cM) Automated name-based View Maps
Cocoa - test - LG8 gTcCIR124 Marker 26.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 gTcCIR124 Marker 26.8 (cM) Automated name-based View Maps
gTcCIR114 Marker 25.8 Cocoa - consensus_disease_res - LG8 gTcCIR114 Marker 26.2 (cM) Automated name-based View Maps
Cocoa - test - LG8 gTcCIR114 Marker 26.2 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG8 gTcCIR114 Marker 4 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 gTcCIR114 Marker 26.2 (cM) Automated name-based View Maps
cTcCIR63 Marker 80.1 Cocoa - consensus_disease_res - LG8 cTcCIR63 Marker 45.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 cTcCIR63 Marker 45.1 (cM) Automated name-based View Maps
Cocoa - test - LG8 cTcCIR63 Marker 45.1 (cM) Automated name-based View Maps
mTcCIR1 Marker 0 Cocoa - TSH516 - LG8 mTcCIR1 Marker 50.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR1 Marker 0 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR1 Marker 0 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR1 Marker 195,613 - 195,946 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR1 Marker 0 (cM) Automated name-based View Maps
Cocoa - test - LG8 mTcCIR1 Marker 0 (cM) Automated name-based View Maps
DxC_BSI_lg8 QTL 56 - 80 No other positions